FitBenchmarking
v0.2.0
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W
A
AccTable (class in fitbenchmarking.results_processing.acc_table)
additional_info (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
algorithm_check (fitbenchmarking.controllers.base_controller.Controller attribute)
(fitbenchmarking.controllers.bumps_controller.BumpsController attribute)
(fitbenchmarking.controllers.dfo_controller.DFOController attribute)
(fitbenchmarking.controllers.gradient_free_controller.GradientFreeController attribute)
(fitbenchmarking.controllers.gsl_controller.GSLController attribute)
(fitbenchmarking.controllers.horace_controller.HoraceController attribute)
(fitbenchmarking.controllers.levmar_controller.LevmarController attribute)
(fitbenchmarking.controllers.mantid_controller.MantidController attribute)
(fitbenchmarking.controllers.matlab_controller.MatlabController attribute)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController attribute)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController attribute)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController attribute)
(fitbenchmarking.controllers.minuit_controller.MinuitController attribute)
(fitbenchmarking.controllers.ralfit_controller.RALFitController attribute)
(fitbenchmarking.controllers.scipy_controller.ScipyController attribute)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController attribute)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController attribute)
Analytic (class in fitbenchmarking.hessian.analytic_hessian)
(class in fitbenchmarking.jacobian.analytic_jacobian)
B
BaseNLLSCostFunc (class in fitbenchmarking.cost_func.nlls_base_cost_func)
benchmark() (in module fitbenchmarking.core.fitting_benchmarking)
best_fit_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
BumpsController (class in fitbenchmarking.controllers.bumps_controller)
C
check_attributes() (fitbenchmarking.controllers.base_controller.Controller method)
check_bounds_respected() (fitbenchmarking.controllers.base_controller.Controller method)
check_elapsed_time() (fitbenchmarking.utils.timer.TimerWithMaxTime method)
check_minimizer_bounds() (fitbenchmarking.controllers.base_controller.Controller method)
class_message (fitbenchmarking.utils.exceptions.ControllerAttributeError attribute)
(fitbenchmarking.utils.exceptions.CostFuncError attribute)
(fitbenchmarking.utils.exceptions.FilepathTooLongError attribute)
(fitbenchmarking.utils.exceptions.FitBenchmarkException attribute)
(fitbenchmarking.utils.exceptions.FittingProblemError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleHessianError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleJacobianError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleMinimizerError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleProblemError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleTableError attribute)
(fitbenchmarking.utils.exceptions.IncorrectBoundsError attribute)
(fitbenchmarking.utils.exceptions.MaxRuntimeError attribute)
(fitbenchmarking.utils.exceptions.MissingBoundsError attribute)
(fitbenchmarking.utils.exceptions.MissingSoftwareError attribute)
(fitbenchmarking.utils.exceptions.NoAnalyticJacobian attribute)
(fitbenchmarking.utils.exceptions.NoControllerError attribute)
(fitbenchmarking.utils.exceptions.NoDataError attribute)
(fitbenchmarking.utils.exceptions.NoHessianError attribute)
(fitbenchmarking.utils.exceptions.NoJacobianError attribute)
(fitbenchmarking.utils.exceptions.NoParserError attribute)
(fitbenchmarking.utils.exceptions.NoResultsError attribute)
(fitbenchmarking.utils.exceptions.OptionsError attribute)
(fitbenchmarking.utils.exceptions.ParsingError attribute)
(fitbenchmarking.utils.exceptions.PlottingError attribute)
(fitbenchmarking.utils.exceptions.UnknownMinimizerError attribute)
(fitbenchmarking.utils.exceptions.UnknownTableError attribute)
(fitbenchmarking.utils.exceptions.UnsupportedMinimizerError attribute)
(fitbenchmarking.utils.exceptions.ValidationException attribute)
cleanup() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gradient_free_controller.GradientFreeController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.horace_controller.HoraceController method)
(fitbenchmarking.controllers.levmar_controller.LevmarController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.matlab_controller.MatlabController method)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController method)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController method)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
clear_matlab() (fitbenchmarking.controllers.matlab_mixin.MatlabMixin method)
CompareTable (class in fitbenchmarking.results_processing.compare_table)
Controller (class in fitbenchmarking.controllers.base_controller)
controller_name (fitbenchmarking.controllers.base_controller.Controller attribute)
(fitbenchmarking.controllers.gradient_free_controller.GradientFreeController attribute)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController attribute)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController attribute)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController attribute)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController attribute)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController attribute)
ControllerAttributeError
ControllerFactory (class in fitbenchmarking.controllers.controller_factory)
correct_data() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
(in module fitbenchmarking.parsing.fitting_problem)
COST_FUNCTION_MAP (fitbenchmarking.controllers.mantid_controller.MantidController attribute)
CostFunc (class in fitbenchmarking.cost_func.base_cost_func)
CostFuncError
create() (in module fitbenchmarking.results_processing.fitting_report)
(in module fitbenchmarking.results_processing.problem_summary_page)
create_controller() (fitbenchmarking.controllers.controller_factory.ControllerFactory static method)
create_cost_func() (in module fitbenchmarking.cost_func.cost_func_factory)
create_directories() (in module fitbenchmarking.core.results_output)
create_hessian() (in module fitbenchmarking.hessian.hessian_factory)
create_jacobian() (in module fitbenchmarking.jacobian.jacobian_factory)
create_pandas_data_frame() (fitbenchmarking.results_processing.base_table.Table method)
create_parser() (fitbenchmarking.parsing.parser_factory.ParserFactory static method)
create_plot() (in module fitbenchmarking.results_processing.performance_profiler)
create_plots() (in module fitbenchmarking.core.results_output)
create_prob_group() (in module fitbenchmarking.results_processing.fitting_report)
create_problem_level_index() (in module fitbenchmarking.core.results_output)
create_results_dict() (fitbenchmarking.results_processing.base_table.Table method)
create_results_tables() (in module fitbenchmarking.results_processing.tables)
css() (in module fitbenchmarking.utils.create_dirs)
CutestParser (class in fitbenchmarking.parsing.cutest_parser)
D
data_e (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
data_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
data_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
data_y (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
Default (class in fitbenchmarking.jacobian.default_jacobian)
DEFAULT_FITTING (fitbenchmarking.utils.options.Options attribute)
DEFAULT_HESSIAN (fitbenchmarking.utils.options.Options attribute)
DEFAULT_JACOBIAN (fitbenchmarking.utils.options.Options attribute)
DEFAULT_LOGGING (fitbenchmarking.utils.options.Options attribute)
DEFAULT_MINIMZERS (fitbenchmarking.utils.options.Options attribute)
DEFAULT_OUTPUT (fitbenchmarking.utils.options.Options attribute)
DEFAULT_PLOTTING (fitbenchmarking.utils.options.Options attribute)
DEFAULTS (fitbenchmarking.utils.options.Options attribute)
del_contents_of_dir() (in module fitbenchmarking.utils.create_dirs)
description (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
DFOController (class in fitbenchmarking.controllers.dfo_controller)
display_str() (fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
E
end_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
equation (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
error_code (fitbenchmarking.utils.exceptions.ControllerAttributeError attribute)
(fitbenchmarking.utils.exceptions.CostFuncError attribute)
(fitbenchmarking.utils.exceptions.FilepathTooLongError attribute)
(fitbenchmarking.utils.exceptions.FitBenchmarkException attribute)
(fitbenchmarking.utils.exceptions.FittingProblemError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleHessianError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleJacobianError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleMinimizerError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleProblemError attribute)
(fitbenchmarking.utils.exceptions.IncompatibleTableError attribute)
(fitbenchmarking.utils.exceptions.IncorrectBoundsError attribute)
(fitbenchmarking.utils.exceptions.MaxRuntimeError attribute)
(fitbenchmarking.utils.exceptions.MissingBoundsError attribute)
(fitbenchmarking.utils.exceptions.MissingSoftwareError attribute)
(fitbenchmarking.utils.exceptions.NoAnalyticJacobian attribute)
(fitbenchmarking.utils.exceptions.NoControllerError attribute)
(fitbenchmarking.utils.exceptions.NoDataError attribute)
(fitbenchmarking.utils.exceptions.NoHessianError attribute)
(fitbenchmarking.utils.exceptions.NoJacobianError attribute)
(fitbenchmarking.utils.exceptions.NoParserError attribute)
(fitbenchmarking.utils.exceptions.NoResultsError attribute)
(fitbenchmarking.utils.exceptions.OptionsError attribute)
(fitbenchmarking.utils.exceptions.ParsingError attribute)
(fitbenchmarking.utils.exceptions.PlottingError attribute)
(fitbenchmarking.utils.exceptions.UnknownMinimizerError attribute)
(fitbenchmarking.utils.exceptions.UnknownTableError attribute)
(fitbenchmarking.utils.exceptions.UnsupportedMinimizerError attribute)
escape_char (fitbenchmarking.utils.output_grabber.StreamGrabber attribute)
eval() (fitbenchmarking.hessian.analytic_hessian.Analytic method)
(fitbenchmarking.hessian.base_hessian.Hessian method)
(fitbenchmarking.hessian.scipy_hessian.Scipy method)
(fitbenchmarking.jacobian.analytic_jacobian.Analytic method)
(fitbenchmarking.jacobian.base_jacobian.Jacobian method)
(fitbenchmarking.jacobian.default_jacobian.Default method)
(fitbenchmarking.jacobian.scipy_jacobian.Scipy method)
eval_chisq() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
eval_cost() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
(fitbenchmarking.cost_func.nlls_base_cost_func.BaseNLLSCostFunc method)
(fitbenchmarking.cost_func.poisson_cost_func.PoissonCostFunc method)
eval_model() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
eval_r() (fitbenchmarking.cost_func.hellinger_nlls_cost_func.HellingerNLLSCostFunc method)
(fitbenchmarking.cost_func.nlls_base_cost_func.BaseNLLSCostFunc method)
(fitbenchmarking.cost_func.nlls_cost_func.NLLSCostFunc method)
(fitbenchmarking.cost_func.weighted_nlls_cost_func.WeightedNLLSCostFunc method)
exception_handler() (in module fitbenchmarking.cli.exception_handler)
execute() (fitbenchmarking.controllers.base_controller.Controller method)
F
figures() (in module fitbenchmarking.utils.create_dirs)
file_path (fitbenchmarking.results_processing.base_table.Table property)
FilepathTooLongError
fit() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gradient_free_controller.GradientFreeController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.horace_controller.HoraceController method)
(fitbenchmarking.controllers.levmar_controller.LevmarController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.matlab_controller.MatlabController method)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController method)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController method)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
fit_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
FitBenchmarkException
fitbenchmarking
module
fitbenchmarking.cli
module
fitbenchmarking.cli.exception_handler
module
fitbenchmarking.cli.main
module
fitbenchmarking.controllers
module
fitbenchmarking.controllers.base_controller
module
fitbenchmarking.controllers.bumps_controller
module
fitbenchmarking.controllers.controller_factory
module
fitbenchmarking.controllers.dfo_controller
module
fitbenchmarking.controllers.gradient_free_controller
module
fitbenchmarking.controllers.gsl_controller
module
fitbenchmarking.controllers.horace_controller
module
fitbenchmarking.controllers.levmar_controller
module
fitbenchmarking.controllers.mantid_controller
module
fitbenchmarking.controllers.matlab_controller
module
fitbenchmarking.controllers.matlab_curve_controller
module
fitbenchmarking.controllers.matlab_mixin
module
fitbenchmarking.controllers.matlab_opt_controller
module
fitbenchmarking.controllers.matlab_stats_controller
module
fitbenchmarking.controllers.minuit_controller
module
fitbenchmarking.controllers.ralfit_controller
module
fitbenchmarking.controllers.scipy_controller
module
fitbenchmarking.controllers.scipy_go_controller
module
fitbenchmarking.controllers.scipy_ls_controller
module
fitbenchmarking.core
module
fitbenchmarking.core.fitting_benchmarking
module
fitbenchmarking.core.results_output
module
fitbenchmarking.cost_func
module
fitbenchmarking.cost_func.base_cost_func
module
fitbenchmarking.cost_func.cost_func_factory
module
fitbenchmarking.cost_func.hellinger_nlls_cost_func
module
fitbenchmarking.cost_func.nlls_base_cost_func
module
fitbenchmarking.cost_func.nlls_cost_func
module
fitbenchmarking.cost_func.poisson_cost_func
module
fitbenchmarking.cost_func.weighted_nlls_cost_func
module
fitbenchmarking.hessian
module
fitbenchmarking.hessian.analytic_hessian
module
fitbenchmarking.hessian.base_hessian
module
fitbenchmarking.hessian.hessian_factory
module
fitbenchmarking.hessian.scipy_hessian
module
fitbenchmarking.jacobian
module
fitbenchmarking.jacobian.analytic_jacobian
module
fitbenchmarking.jacobian.base_jacobian
module
fitbenchmarking.jacobian.default_jacobian
module
fitbenchmarking.jacobian.jacobian_factory
module
fitbenchmarking.jacobian.scipy_jacobian
module
fitbenchmarking.parsing
module
fitbenchmarking.parsing.base_parser
module
fitbenchmarking.parsing.cutest_parser
module
fitbenchmarking.parsing.fitbenchmark_parser
module
fitbenchmarking.parsing.fitting_problem
module
fitbenchmarking.parsing.ivp_parser
module
fitbenchmarking.parsing.mantid_parser
module
fitbenchmarking.parsing.nist_data_functions
module
fitbenchmarking.parsing.nist_parser
module
fitbenchmarking.parsing.parser_factory
module
fitbenchmarking.results_processing
module
fitbenchmarking.results_processing.acc_table
module
fitbenchmarking.results_processing.base_table
module
fitbenchmarking.results_processing.compare_table
module
fitbenchmarking.results_processing.fitting_report
module
fitbenchmarking.results_processing.local_min_table
module
fitbenchmarking.results_processing.performance_profiler
module
fitbenchmarking.results_processing.plots
module
fitbenchmarking.results_processing.problem_summary_page
module
fitbenchmarking.results_processing.runtime_table
module
fitbenchmarking.results_processing.tables
module
fitbenchmarking.utils
module
fitbenchmarking.utils.create_dirs
module
fitbenchmarking.utils.debug
module
fitbenchmarking.utils.exceptions
module
fitbenchmarking.utils.fitbm_result
module
fitbenchmarking.utils.log
module
fitbenchmarking.utils.misc
module
fitbenchmarking.utils.options
module
fitbenchmarking.utils.output_grabber
module
fitbenchmarking.utils.timer
module
fitbenchmarking.utils.write_files
module
FitbenchmarkParser (class in fitbenchmarking.parsing.fitbenchmark_parser)
FittingProblem (class in fitbenchmarking.parsing.fitting_problem)
FittingProblemError
FittingResult (class in fitbenchmarking.utils.fitbm_result)
flag (fitbenchmarking.controllers.base_controller.Controller property)
format (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
format_function_scipy() (in module fitbenchmarking.parsing.nist_data_functions)
format_plot() (fitbenchmarking.results_processing.plots.Plot method)
function (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
G
generate_table() (in module fitbenchmarking.results_processing.tables)
get_colour_df() (fitbenchmarking.results_processing.base_table.Table method)
get_colours_for_row() (fitbenchmarking.results_processing.base_table.Table method)
get_css() (in module fitbenchmarking.utils.misc)
get_description() (fitbenchmarking.results_processing.base_table.Table method)
get_error_str() (fitbenchmarking.results_processing.base_table.Table static method)
get_figure_paths() (in module fitbenchmarking.results_processing.fitting_report)
get_function_params() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
get_js() (in module fitbenchmarking.utils.misc)
get_link_str() (fitbenchmarking.results_processing.base_table.Table method)
get_logger() (in module fitbenchmarking.utils.log)
get_parser() (in module fitbenchmarking.cli.main)
get_printable_table() (in module fitbenchmarking.utils.debug)
get_problem_files() (in module fitbenchmarking.utils.misc)
get_str_dict() (fitbenchmarking.results_processing.base_table.Table method)
get_str_result() (fitbenchmarking.results_processing.base_table.Table method)
get_value() (fitbenchmarking.results_processing.acc_table.AccTable method)
(fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
(fitbenchmarking.results_processing.runtime_table.RuntimeTable method)
GradientFreeController (class in fitbenchmarking.controllers.gradient_free_controller)
group_results() (in module fitbenchmarking.utils.create_dirs)
GSLController (class in fitbenchmarking.controllers.gsl_controller)
H
HellingerNLLSCostFunc (class in fitbenchmarking.cost_func.hellinger_nlls_cost_func)
hes_cost() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
(fitbenchmarking.cost_func.nlls_base_cost_func.BaseNLLSCostFunc method)
(fitbenchmarking.cost_func.poisson_cost_func.PoissonCostFunc method)
hes_eval() (fitbenchmarking.controllers.ralfit_controller.RALFitController method)
hes_res() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
(fitbenchmarking.cost_func.hellinger_nlls_cost_func.HellingerNLLSCostFunc method)
(fitbenchmarking.cost_func.nlls_cost_func.NLLSCostFunc method)
(fitbenchmarking.cost_func.poisson_cost_func.PoissonCostFunc method)
(fitbenchmarking.cost_func.weighted_nlls_cost_func.WeightedNLLSCostFunc method)
Hessian (class in fitbenchmarking.hessian.base_hessian)
hessian (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
hessian_enabled_solvers (fitbenchmarking.controllers.base_controller.Controller attribute)
(fitbenchmarking.controllers.ralfit_controller.RALFitController attribute)
(fitbenchmarking.controllers.scipy_controller.ScipyController attribute)
HoraceController (class in fitbenchmarking.controllers.horace_controller)
I
incompatible_problems (fitbenchmarking.controllers.base_controller.Controller attribute)
(fitbenchmarking.controllers.horace_controller.HoraceController attribute)
(fitbenchmarking.controllers.matlab_controller.MatlabController attribute)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController attribute)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController attribute)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController attribute)
INCOMPATIBLE_PROBLEMS (fitbenchmarking.hessian.base_hessian.Hessian attribute)
(fitbenchmarking.hessian.scipy_hessian.Scipy attribute)
(fitbenchmarking.jacobian.base_jacobian.Jacobian attribute)
(fitbenchmarking.jacobian.scipy_jacobian.Scipy attribute)
IncompatibleHessianError
IncompatibleJacobianError
IncompatibleMinimizerError
IncompatibleProblemError
IncompatibleTableError
IncorrectBoundsError
ini_guess_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
is_int() (in module fitbenchmarking.parsing.nist_data_functions)
is_safe() (in module fitbenchmarking.parsing.nist_data_functions)
IVPParser (class in fitbenchmarking.parsing.ivp_parser)
J
jac_cost() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
(fitbenchmarking.cost_func.nlls_base_cost_func.BaseNLLSCostFunc method)
(fitbenchmarking.cost_func.poisson_cost_func.PoissonCostFunc method)
jac_res() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
(fitbenchmarking.cost_func.hellinger_nlls_cost_func.HellingerNLLSCostFunc method)
(fitbenchmarking.cost_func.nlls_cost_func.NLLSCostFunc method)
(fitbenchmarking.cost_func.poisson_cost_func.PoissonCostFunc method)
(fitbenchmarking.cost_func.weighted_nlls_cost_func.WeightedNLLSCostFunc method)
Jacobian (class in fitbenchmarking.jacobian.base_jacobian)
jacobian (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
jacobian_enabled_solvers (fitbenchmarking.controllers.base_controller.Controller attribute)
(fitbenchmarking.controllers.gsl_controller.GSLController attribute)
(fitbenchmarking.controllers.levmar_controller.LevmarController attribute)
(fitbenchmarking.controllers.mantid_controller.MantidController attribute)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController attribute)
(fitbenchmarking.controllers.ralfit_controller.RALFitController attribute)
(fitbenchmarking.controllers.scipy_controller.ScipyController attribute)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController attribute)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController attribute)
L
LevmarController (class in fitbenchmarking.controllers.levmar_controller)
load_table() (in module fitbenchmarking.results_processing.tables)
LocalMinTable (class in fitbenchmarking.results_processing.local_min_table)
loop_over_benchmark_problems() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_cost_function() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_fitting_software() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_hessians() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_jacobians() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_minimizers() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_starting_values() (in module fitbenchmarking.core.fitting_benchmarking)
M
main() (in module fitbenchmarking.cli.main)
MantidController (class in fitbenchmarking.controllers.mantid_controller)
MantidParser (class in fitbenchmarking.parsing.mantid_parser)
MatlabController (class in fitbenchmarking.controllers.matlab_controller)
MatlabCurveController (class in fitbenchmarking.controllers.matlab_curve_controller)
MatlabMixin (class in fitbenchmarking.controllers.matlab_mixin)
MatlabOptController (class in fitbenchmarking.controllers.matlab_opt_controller)
MatlabStatsController (class in fitbenchmarking.controllers.matlab_stats_controller)
MatlabTimerInterface (class in fitbenchmarking.controllers.matlab_mixin)
MaxRuntimeError
method (fitbenchmarking.hessian.base_hessian.Hessian property)
(fitbenchmarking.jacobian.base_jacobian.Jacobian property)
minimizer_dropdown_html() (fitbenchmarking.results_processing.base_table.Table method)
minimizers (fitbenchmarking.utils.options.Options property)
MinuitController (class in fitbenchmarking.controllers.minuit_controller)
MissingBoundsError
MissingSoftwareError
modified_minimizer_name() (fitbenchmarking.utils.fitbm_result.FittingResult method)
module
fitbenchmarking
fitbenchmarking.cli
fitbenchmarking.cli.exception_handler
fitbenchmarking.cli.main
fitbenchmarking.controllers
fitbenchmarking.controllers.base_controller
fitbenchmarking.controllers.bumps_controller
fitbenchmarking.controllers.controller_factory
fitbenchmarking.controllers.dfo_controller
fitbenchmarking.controllers.gradient_free_controller
fitbenchmarking.controllers.gsl_controller
fitbenchmarking.controllers.horace_controller
fitbenchmarking.controllers.levmar_controller
fitbenchmarking.controllers.mantid_controller
fitbenchmarking.controllers.matlab_controller
fitbenchmarking.controllers.matlab_curve_controller
fitbenchmarking.controllers.matlab_mixin
fitbenchmarking.controllers.matlab_opt_controller
fitbenchmarking.controllers.matlab_stats_controller
fitbenchmarking.controllers.minuit_controller
fitbenchmarking.controllers.ralfit_controller
fitbenchmarking.controllers.scipy_controller
fitbenchmarking.controllers.scipy_go_controller
fitbenchmarking.controllers.scipy_ls_controller
fitbenchmarking.core
fitbenchmarking.core.fitting_benchmarking
fitbenchmarking.core.results_output
fitbenchmarking.cost_func
fitbenchmarking.cost_func.base_cost_func
fitbenchmarking.cost_func.cost_func_factory
fitbenchmarking.cost_func.hellinger_nlls_cost_func
fitbenchmarking.cost_func.nlls_base_cost_func
fitbenchmarking.cost_func.nlls_cost_func
fitbenchmarking.cost_func.poisson_cost_func
fitbenchmarking.cost_func.weighted_nlls_cost_func
fitbenchmarking.hessian
fitbenchmarking.hessian.analytic_hessian
fitbenchmarking.hessian.base_hessian
fitbenchmarking.hessian.hessian_factory
fitbenchmarking.hessian.scipy_hessian
fitbenchmarking.jacobian
fitbenchmarking.jacobian.analytic_jacobian
fitbenchmarking.jacobian.base_jacobian
fitbenchmarking.jacobian.default_jacobian
fitbenchmarking.jacobian.jacobian_factory
fitbenchmarking.jacobian.scipy_jacobian
fitbenchmarking.parsing
fitbenchmarking.parsing.base_parser
fitbenchmarking.parsing.cutest_parser
fitbenchmarking.parsing.fitbenchmark_parser
fitbenchmarking.parsing.fitting_problem
fitbenchmarking.parsing.ivp_parser
fitbenchmarking.parsing.mantid_parser
fitbenchmarking.parsing.nist_data_functions
fitbenchmarking.parsing.nist_parser
fitbenchmarking.parsing.parser_factory
fitbenchmarking.results_processing
fitbenchmarking.results_processing.acc_table
fitbenchmarking.results_processing.base_table
fitbenchmarking.results_processing.compare_table
fitbenchmarking.results_processing.fitting_report
fitbenchmarking.results_processing.local_min_table
fitbenchmarking.results_processing.performance_profiler
fitbenchmarking.results_processing.plots
fitbenchmarking.results_processing.problem_summary_page
fitbenchmarking.results_processing.runtime_table
fitbenchmarking.results_processing.tables
fitbenchmarking.utils
fitbenchmarking.utils.create_dirs
fitbenchmarking.utils.debug
fitbenchmarking.utils.exceptions
fitbenchmarking.utils.fitbm_result
fitbenchmarking.utils.log
fitbenchmarking.utils.misc
fitbenchmarking.utils.options
fitbenchmarking.utils.output_grabber
fitbenchmarking.utils.timer
fitbenchmarking.utils.write_files
multifit (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
multivariate (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
N
name (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
name() (fitbenchmarking.hessian.analytic_hessian.Analytic method)
(fitbenchmarking.hessian.base_hessian.Hessian method)
(fitbenchmarking.jacobian.analytic_jacobian.Analytic method)
(fitbenchmarking.jacobian.base_jacobian.Jacobian method)
(fitbenchmarking.jacobian.default_jacobian.Default method)
nist_func_definition() (in module fitbenchmarking.parsing.nist_data_functions)
nist_hessian_definition() (in module fitbenchmarking.parsing.nist_data_functions)
nist_jacobian_definition() (in module fitbenchmarking.parsing.nist_data_functions)
NISTParser (class in fitbenchmarking.parsing.nist_parser)
NLLSCostFunc (class in fitbenchmarking.cost_func.nlls_cost_func)
NoAnalyticJacobian
NoControllerError
NoDataError
NoHessianError
NoJacobianError
NoParserError
NoResultsError
norm_acc (fitbenchmarking.utils.fitbm_result.FittingResult property)
norm_runtime (fitbenchmarking.utils.fitbm_result.FittingResult property)
O
Options (class in fitbenchmarking.utils.options)
OptionsError
OutputGrabber (class in fitbenchmarking.utils.output_grabber)
P
param_names (fitbenchmarking.parsing.fitting_problem.FittingProblem property)
parse() (fitbenchmarking.parsing.base_parser.Parser method)
(fitbenchmarking.parsing.cutest_parser.CutestParser method)
(fitbenchmarking.parsing.fitbenchmark_parser.FitbenchmarkParser method)
(fitbenchmarking.parsing.nist_parser.NISTParser method)
parse_problem_file() (in module fitbenchmarking.parsing.parser_factory)
Parser (class in fitbenchmarking.parsing.base_parser)
ParserFactory (class in fitbenchmarking.parsing.parser_factory)
ParsingError
perform_fit() (in module fitbenchmarking.core.fitting_benchmarking)
Plot (class in fitbenchmarking.results_processing.plots)
plot() (in module fitbenchmarking.results_processing.performance_profiler)
plot_best() (fitbenchmarking.results_processing.plots.Plot method)
plot_data() (fitbenchmarking.results_processing.plots.Plot method)
plot_fit() (fitbenchmarking.results_processing.plots.Plot method)
plot_initial_guess() (fitbenchmarking.results_processing.plots.Plot method)
plot_summary() (fitbenchmarking.results_processing.plots.Plot class method)
PlottingError
PoissonCostFunc (class in fitbenchmarking.cost_func.poisson_cost_func)
prepare() (fitbenchmarking.controllers.base_controller.Controller method)
prepare_profile_data() (in module fitbenchmarking.results_processing.performance_profiler)
preprocess_data() (in module fitbenchmarking.core.results_output)
problem_dropdown_html() (fitbenchmarking.results_processing.base_table.Table method)
profile() (in module fitbenchmarking.results_processing.performance_profiler)
py_to_mat() (fitbenchmarking.controllers.matlab_mixin.MatlabMixin method)
R
RALFitController (class in fitbenchmarking.controllers.ralfit_controller)
read_list() (in module fitbenchmarking.utils.options)
read_range() (in module fitbenchmarking.utils.options)
read_value() (fitbenchmarking.utils.options.Options method)
readOutput() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
record_alg_type() (fitbenchmarking.controllers.base_controller.Controller method)
reset() (fitbenchmarking.utils.options.Options method)
(fitbenchmarking.utils.timer.TimerWithMaxTime method)
results() (in module fitbenchmarking.utils.create_dirs)
results_dir (fitbenchmarking.utils.options.Options property)
run() (in module fitbenchmarking.cli.main)
RuntimeTable (class in fitbenchmarking.results_processing.runtime_table)
S
sanitised_min_name() (fitbenchmarking.utils.fitbm_result.FittingResult method)
sanitised_name (fitbenchmarking.utils.fitbm_result.FittingResult property)
save_colourbar() (fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
save_results() (in module fitbenchmarking.core.results_output)
Scipy (class in fitbenchmarking.hessian.scipy_hessian)
(class in fitbenchmarking.jacobian.scipy_jacobian)
ScipyController (class in fitbenchmarking.controllers.scipy_controller)
ScipyGOController (class in fitbenchmarking.controllers.scipy_go_controller)
ScipyLSController (class in fitbenchmarking.controllers.scipy_ls_controller)
set_value_ranges() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
setup() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gradient_free_controller.GradientFreeController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.horace_controller.HoraceController method)
(fitbenchmarking.controllers.levmar_controller.LevmarController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.matlab_controller.MatlabController method)
(fitbenchmarking.controllers.matlab_curve_controller.MatlabCurveController method)
(fitbenchmarking.controllers.matlab_opt_controller.MatlabOptController method)
(fitbenchmarking.controllers.matlab_stats_controller.MatlabStatsController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_go_controller.ScipyGOController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
setup_logger() (in module fitbenchmarking.utils.log)
setup_timer() (fitbenchmarking.controllers.matlab_mixin.MatlabMixin method)
software (fitbenchmarking.controllers.base_controller.Controller property)
sorted_index (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
start() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
(fitbenchmarking.utils.timer.TimerWithMaxTime method)
start_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
starting_values (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
stop() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
(fitbenchmarking.utils.timer.TimerWithMaxTime method)
StreamGrabber (class in fitbenchmarking.utils.output_grabber)
summary_best_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
summary_plot_options (fitbenchmarking.results_processing.plots.Plot attribute)
support_pages() (in module fitbenchmarking.utils.create_dirs)
T
Table (class in fitbenchmarking.results_processing.base_table)
table_title (fitbenchmarking.results_processing.base_table.Table property)
TimerWithMaxTime (class in fitbenchmarking.utils.timer)
to_html() (fitbenchmarking.results_processing.base_table.Table method)
to_txt() (fitbenchmarking.results_processing.base_table.Table method)
U
UnknownMinimizerError
UnknownTableError
UnsupportedMinimizerError
V
VALID (fitbenchmarking.utils.options.Options attribute)
VALID_FITTING (fitbenchmarking.utils.options.Options attribute)
VALID_FLAGS (fitbenchmarking.controllers.base_controller.Controller attribute)
VALID_HESSIAN (fitbenchmarking.utils.options.Options attribute)
VALID_JACOBIAN (fitbenchmarking.utils.options.Options attribute)
VALID_LOGGING (fitbenchmarking.utils.options.Options attribute)
VALID_MINIMIZERS (fitbenchmarking.utils.options.Options attribute)
VALID_OUTPUT (fitbenchmarking.utils.options.Options attribute)
VALID_PLOTTING (fitbenchmarking.utils.options.Options attribute)
VALID_SECTIONS (fitbenchmarking.utils.options.Options attribute)
validate() (fitbenchmarking.controllers.base_controller.Controller method)
validate_algorithm_type() (fitbenchmarking.cost_func.base_cost_func.CostFunc method)
validate_minimizer() (fitbenchmarking.controllers.base_controller.Controller method)
ValidationException
vals_to_colour() (fitbenchmarking.results_processing.base_table.Table static method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable static method)
value_ranges (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
verify() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
W
WeightedNLLSCostFunc (class in fitbenchmarking.cost_func.weighted_nlls_cost_func)
write() (fitbenchmarking.utils.options.Options method)
write_file() (in module fitbenchmarking.utils.write_files)
write_to_stream() (fitbenchmarking.utils.options.Options method)
Read the Docs
v: v0.2.0
Versions
latest
stable
v0.2.0
v0.2.0-rc3
v0.2.0-rc2
v0.2.0-rc1
v0.1.5
v0.1.5-beta1
v0.1.4
v0.1.4-rc2
v0.1.4-rc1
v0.1.3
v0.1.2
v0.1.1
v0.1.0
release-0.1.x
765_controllers-linting
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