FitBenchmarking
v0.1.4
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FitBenchmarking
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F
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A
AccTable (class in fitbenchmarking.results_processing.acc_table)
additional_info (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
B
benchmark() (in module fitbenchmarking.core.fitting_benchmarking)
BumpsController (class in fitbenchmarking.controllers.bumps_controller)
C
check_attributes() (fitbenchmarking.controllers.base_controller.Controller method)
cleanup() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
colour_highlight() (fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
CompareTable (class in fitbenchmarking.results_processing.compare_table)
Controller (class in fitbenchmarking.controllers.base_controller)
ControllerAttributeError
ControllerFactory (class in fitbenchmarking.controllers.controller_factory)
correct_data() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
(in module fitbenchmarking.parsing.fitting_problem)
create() (in module fitbenchmarking.results_processing.support_page)
create_controller() (fitbenchmarking.controllers.controller_factory.ControllerFactory static method)
create_directories() (in module fitbenchmarking.core.results_output)
create_jacobian() (in module fitbenchmarking.jacobian.jacobian_factory)
create_pandas_data_frame() (fitbenchmarking.results_processing.base_table.Table method)
create_parser() (fitbenchmarking.parsing.parser_factory.ParserFactory static method)
create_plot() (in module fitbenchmarking.results_processing.performance_profiler)
create_plots() (in module fitbenchmarking.core.results_output)
create_prob_group() (in module fitbenchmarking.results_processing.support_page)
create_problem_level_index() (in module fitbenchmarking.core.results_output)
create_results_dict() (fitbenchmarking.results_processing.base_table.Table method)
create_results_tables() (in module fitbenchmarking.results_processing.tables)
css() (in module fitbenchmarking.utils.create_dirs)
CutestParser (class in fitbenchmarking.parsing.cutest_parser)
D
data_e (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
data_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
data_y (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
DEFAULT_FITTING (fitbenchmarking.utils.options.Options attribute)
DEFAULT_LOGGING (fitbenchmarking.utils.options.Options attribute)
DEFAULT_MINIMZERS (fitbenchmarking.utils.options.Options attribute)
DEFAULT_PLOTTING (fitbenchmarking.utils.options.Options attribute)
DEFAULTS (fitbenchmarking.utils.options.Options attribute)
del_contents_of_dir() (in module fitbenchmarking.utils.create_dirs)
DFOController (class in fitbenchmarking.controllers.dfo_controller)
display_str() (fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
E
enable_error() (fitbenchmarking.results_processing.base_table.Table method)
enable_link() (fitbenchmarking.results_processing.base_table.Table method)
end_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
equation (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
escape_char (fitbenchmarking.utils.output_grabber.StreamGrabber attribute)
eval() (fitbenchmarking.jacobian.base_jacobian.Jacobian method)
(fitbenchmarking.jacobian.SciPyFD_2point_jacobian.ScipyTwoPoint method)
(fitbenchmarking.jacobian.SciPyFD_3point_jacobian.ScipyThreePoint method)
(fitbenchmarking.jacobian.SciPyFD_cs_jacobian.ScipyCS method)
eval_chisq() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
eval_f() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
eval_jac() (fitbenchmarking.controllers.scipy_controller.ScipyController method)
eval_r() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
eval_r_norm() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
eval_starting_params() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
exception_handler() (in module fitbenchmarking.cli.exception_handler)
F
figures() (in module fitbenchmarking.utils.create_dirs)
file_path (fitbenchmarking.results_processing.base_table.Table attribute)
fit() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
FitBenchmarkException
fitbenchmarking (module)
fitbenchmarking.cli (module)
fitbenchmarking.cli.exception_handler (module)
fitbenchmarking.cli.main (module)
fitbenchmarking.controllers (module)
fitbenchmarking.controllers.base_controller (module)
fitbenchmarking.controllers.bumps_controller (module)
fitbenchmarking.controllers.controller_factory (module)
fitbenchmarking.controllers.dfo_controller (module)
fitbenchmarking.controllers.gsl_controller (module)
fitbenchmarking.controllers.mantid_controller (module)
fitbenchmarking.controllers.minuit_controller (module)
fitbenchmarking.controllers.ralfit_controller (module)
fitbenchmarking.controllers.scipy_controller (module)
fitbenchmarking.controllers.scipy_ls_controller (module)
fitbenchmarking.core (module)
fitbenchmarking.core.fitting_benchmarking (module)
fitbenchmarking.core.results_output (module)
fitbenchmarking.jacobian (module)
fitbenchmarking.jacobian.base_jacobian (module)
fitbenchmarking.jacobian.jacobian_factory (module)
fitbenchmarking.jacobian.SciPyFD_2point_jacobian (module)
fitbenchmarking.jacobian.SciPyFD_3point_jacobian (module)
fitbenchmarking.jacobian.SciPyFD_cs_jacobian (module)
fitbenchmarking.parsing (module)
fitbenchmarking.parsing.base_parser (module)
fitbenchmarking.parsing.cutest_parser (module)
fitbenchmarking.parsing.fitbenchmark_parser (module)
fitbenchmarking.parsing.fitting_problem (module)
fitbenchmarking.parsing.nist_data_functions (module)
fitbenchmarking.parsing.nist_parser (module)
fitbenchmarking.parsing.parser_factory (module)
fitbenchmarking.results_processing (module)
fitbenchmarking.results_processing.acc_table (module)
fitbenchmarking.results_processing.base_table (module)
fitbenchmarking.results_processing.compare_table (module)
fitbenchmarking.results_processing.local_min_table (module)
fitbenchmarking.results_processing.performance_profiler (module)
fitbenchmarking.results_processing.plots (module)
fitbenchmarking.results_processing.runtime_table (module)
fitbenchmarking.results_processing.support_page (module)
fitbenchmarking.results_processing.tables (module)
fitbenchmarking.utils (module)
fitbenchmarking.utils.create_dirs (module)
fitbenchmarking.utils.exceptions (module)
fitbenchmarking.utils.fitbm_result (module)
fitbenchmarking.utils.log (module)
fitbenchmarking.utils.misc (module)
fitbenchmarking.utils.options (module)
fitbenchmarking.utils.output_grabber (module)
FitbenchmarkParser (class in fitbenchmarking.parsing.fitbenchmark_parser)
FittingProblem (class in fitbenchmarking.parsing.fitting_problem)
FittingProblemError
FittingResult (class in fitbenchmarking.utils.fitbm_result)
flag (fitbenchmarking.controllers.base_controller.Controller attribute)
format_function_scipy() (in module fitbenchmarking.parsing.nist_data_functions)
format_plot() (fitbenchmarking.results_processing.plots.Plot method)
function (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
G
generate_table() (in module fitbenchmarking.results_processing.tables)
get_colour() (fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
get_css() (in module fitbenchmarking.utils.misc)
get_description() (fitbenchmarking.results_processing.base_table.Table method)
get_error() (fitbenchmarking.results_processing.base_table.Table method)
get_figure_paths() (in module fitbenchmarking.results_processing.support_page)
get_function_params() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
get_js() (in module fitbenchmarking.utils.misc)
get_links() (fitbenchmarking.results_processing.base_table.Table method)
get_logger() (in module fitbenchmarking.utils.log)
get_parser() (in module fitbenchmarking.cli.main)
get_problem_files() (in module fitbenchmarking.utils.misc)
get_values() (fitbenchmarking.results_processing.acc_table.AccTable method)
(fitbenchmarking.results_processing.base_table.Table method)
(fitbenchmarking.results_processing.compare_table.CompareTable method)
(fitbenchmarking.results_processing.local_min_table.LocalMinTable method)
(fitbenchmarking.results_processing.runtime_table.RuntimeTable method)
group_results() (in module fitbenchmarking.utils.create_dirs)
GSLController (class in fitbenchmarking.controllers.gsl_controller)
I
is_safe() (in module fitbenchmarking.parsing.nist_data_functions)
J
Jacobian (class in fitbenchmarking.jacobian.base_jacobian)
L
load_table() (in module fitbenchmarking.results_processing.tables)
LocalMinTable (class in fitbenchmarking.results_processing.local_min_table)
loop_over_benchmark_problems() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_fitting_software() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_minimizers() (in module fitbenchmarking.core.fitting_benchmarking)
loop_over_starting_values() (in module fitbenchmarking.core.fitting_benchmarking)
M
main() (in module fitbenchmarking.cli.main)
MantidController (class in fitbenchmarking.controllers.mantid_controller)
minimizers (fitbenchmarking.utils.options.Options attribute)
MinuitController (class in fitbenchmarking.controllers.minuit_controller)
MissingSoftwareError
multifit (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
N
name (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
nist_func_definition() (in module fitbenchmarking.parsing.nist_data_functions)
NISTParser (class in fitbenchmarking.parsing.nist_parser)
NoControllerError
NoDataError
NoJacobianError
NoParserError
NoResultsError
norm_acc (fitbenchmarking.utils.fitbm_result.FittingResult attribute)
norm_runtime (fitbenchmarking.utils.fitbm_result.FittingResult attribute)
O
Options (class in fitbenchmarking.utils.options)
OptionsError
OutputGrabber (class in fitbenchmarking.utils.output_grabber)
P
param_names (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
parse() (fitbenchmarking.parsing.base_parser.Parser method)
(fitbenchmarking.parsing.cutest_parser.CutestParser method)
(fitbenchmarking.parsing.fitbenchmark_parser.FitbenchmarkParser method)
(fitbenchmarking.parsing.nist_parser.NISTParser method)
parse_problem_file() (in module fitbenchmarking.parsing.parser_factory)
Parser (class in fitbenchmarking.parsing.base_parser)
ParserFactory (class in fitbenchmarking.parsing.parser_factory)
ParsingError
Plot (class in fitbenchmarking.results_processing.plots)
plot() (in module fitbenchmarking.results_processing.performance_profiler)
plot_best() (fitbenchmarking.results_processing.plots.Plot method)
plot_data() (fitbenchmarking.results_processing.plots.Plot method)
plot_fit() (fitbenchmarking.results_processing.plots.Plot method)
plot_initial_guess() (fitbenchmarking.results_processing.plots.Plot method)
prepare() (fitbenchmarking.controllers.base_controller.Controller method)
prepare_profile_data() (in module fitbenchmarking.results_processing.performance_profiler)
preproccess_data() (in module fitbenchmarking.core.results_output)
profile() (in module fitbenchmarking.results_processing.performance_profiler)
R
RALFitController (class in fitbenchmarking.controllers.ralfit_controller)
read_list() (in module fitbenchmarking.utils.options)
read_value() (fitbenchmarking.utils.options.Options method)
readOutput() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
reset() (fitbenchmarking.utils.options.Options method)
results() (in module fitbenchmarking.utils.create_dirs)
results_dir (fitbenchmarking.utils.options.Options attribute)
run() (in module fitbenchmarking.cli.main)
RuntimeTable (class in fitbenchmarking.results_processing.runtime_table)
S
sanitised_min_name (fitbenchmarking.utils.fitbm_result.FittingResult attribute)
sanitised_name (fitbenchmarking.utils.fitbm_result.FittingResult attribute)
save_results() (in module fitbenchmarking.core.results_output)
ScipyController (class in fitbenchmarking.controllers.scipy_controller)
ScipyCS (class in fitbenchmarking.jacobian.SciPyFD_cs_jacobian)
ScipyLSController (class in fitbenchmarking.controllers.scipy_ls_controller)
ScipyThreePoint (class in fitbenchmarking.jacobian.SciPyFD_3point_jacobian)
ScipyTwoPoint (class in fitbenchmarking.jacobian.SciPyFD_2point_jacobian)
setup() (fitbenchmarking.controllers.base_controller.Controller method)
(fitbenchmarking.controllers.bumps_controller.BumpsController method)
(fitbenchmarking.controllers.dfo_controller.DFOController method)
(fitbenchmarking.controllers.gsl_controller.GSLController method)
(fitbenchmarking.controllers.mantid_controller.MantidController method)
(fitbenchmarking.controllers.minuit_controller.MinuitController method)
(fitbenchmarking.controllers.ralfit_controller.RALFitController method)
(fitbenchmarking.controllers.scipy_controller.ScipyController method)
(fitbenchmarking.controllers.scipy_ls_controller.ScipyLSController method)
setup_logger() (in module fitbenchmarking.utils.log)
sorted_index (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
start() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
start_x (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
starting_values (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
stop() (fitbenchmarking.utils.output_grabber.StreamGrabber method)
StreamGrabber (class in fitbenchmarking.utils.output_grabber)
support_pages() (in module fitbenchmarking.utils.create_dirs)
T
Table (class in fitbenchmarking.results_processing.base_table)
table_title (fitbenchmarking.results_processing.base_table.Table attribute)
to_html() (fitbenchmarking.results_processing.base_table.Table method)
to_txt() (fitbenchmarking.results_processing.base_table.Table method)
U
UnknownMinimizerError
UnknownTableError
UnsupportedMinimizerError
V
VALID (fitbenchmarking.utils.options.Options attribute)
VALID_FITTING (fitbenchmarking.utils.options.Options attribute)
VALID_FLAGS (fitbenchmarking.controllers.base_controller.Controller attribute)
VALID_LOGGING (fitbenchmarking.utils.options.Options attribute)
VALID_MINIMIZERS (fitbenchmarking.utils.options.Options attribute)
VALID_PLOTTING (fitbenchmarking.utils.options.Options attribute)
VALID_SECTIONS (fitbenchmarking.utils.options.Options attribute)
validate_minimizer() (fitbenchmarking.controllers.base_controller.Controller method)
value_ranges (fitbenchmarking.parsing.fitting_problem.FittingProblem attribute)
verify() (fitbenchmarking.parsing.fitting_problem.FittingProblem method)
W
write() (fitbenchmarking.utils.options.Options method)
write_to_stream() (fitbenchmarking.utils.options.Options method)
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